Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61686242_61687089_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61686242 - 61687089

Intron Length:

848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTAATTTTG

5'SS Class:

weak_major

3'SS Sequence:

CACCTGATACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

GATTTGTTAACA

Flanking Amino Acid:

ITENTYYILSVFHESCIRGW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.2

64.6

42.1

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

60.3

0.23

51.3

41.2

Minor 5ss

45.9

-0.4

2.8

59.2

45.2

Minor BPS

61.5

0.36

2.1

72.95

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040583

61685297 - 61697585

12289