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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6168657_6170779_F

Intron Information:

Intron Rank:
140211
Intron Class:
major
Intron Phase:
Intron Coordinates:
6168657 - 6170779
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACCC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCGCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
63.4
41.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
87.7
0.85
0.7
81
36
Minor 5ss
38.8
-1.3
3.1
52.4
44.2
Minor BPS
59.8
0.3
1.8
70.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025406
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042953
6141580 - 6170935
29356
ENSAPLT00000041710
6140159 - 6170935
30777
ENSAPLT00000024781
6168411 - 6171681
3271