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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61718090_61718586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61718090 - 61718586
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCGTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TCTCCCCGAGCC
Flanking Amino Acid:
SDHILPVTREAPKVCDACKN
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
78.4
0.64
0.9
68.8
42
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
46.5
-0.2
2
61.97
42.8

Associated Gene:

Gene:
SFRP2
Ensembl Gene ID:
ENSAPLG00000003162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003219
61716065 - 61719079
3015