Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61745742_61754542_F

Intron Information:

Intron Rank:

131215

Intron Class:

major

Intron Phase:

Intron Coordinates:

61745742 - 61754542

Intron Length:

8801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTGAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTAATTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

71.9

36.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.5

0.78

0.9

87.3

23.6

Minor 5ss

35.6

-1.6

3.2

46.9

Minor BPS

70.3

0.72

1.2

80.87

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020478

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040575

61745634 - 61758356

12723