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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61757608_61757941_F

Intron Information:

Intron Rank:
131218
Intron Class:
major
Intron Phase:
Intron Coordinates:
61757608 - 61757941
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTGTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.2
0.57
0.9
69.3
36.9
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
55.8
0.26
1.3
68.57
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020478
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040575
61745634 - 61758356
12723