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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61772506_61775888_F

Intron Information:

Intron Rank:
147526
Intron Class:
major
Intron Phase:
Intron Coordinates:
61772506 - 61775888
Intron Length:
3383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTTCTGTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
81.5
0.71
0.7
76.2
26
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
51.6
-0.1
2.1
63.92
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029452
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021994
61772422 - 61782249
9828
ENSAPLT00000040323
61772357 - 61783163
10807
ENSAPLT00000035299
61772422 - 61813261
40840