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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61776056_61782182_F

Intron Information:

Intron Rank:
147527
Intron Class:
major
Intron Phase:
Intron Coordinates:
61776056 - 61782182
Intron Length:
6127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.3
0.79
0.7
84.6
30.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029452
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021994
61772422 - 61782249
9828