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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61776056_61782985_F

Intron Information:

Intron Rank:
147531
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
61776056 - 61782985
Intron Length:
6930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCCTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
AATTTCGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
54.2
0.09
1.6
61.6
29
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
50.1
0.08
2.2
74.86
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029452
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040323
61772357 - 61783163
10807