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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61776056_61813224_F

Intron Information:

Intron Rank:
147529
Intron Class:
major
Intron Phase:
Intron Coordinates:
61776056 - 61813224
Intron Length:
37169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTTTTCTGAGGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.1
0.72
0.8
80.7
31.3
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
48.6
-0.1
2
64.68
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029452
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035299
61772422 - 61813261
40840