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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61882750_61883762_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61882750 - 61883762
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
SEGFSIDHKNGSVFTTKPMS
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.3
0.68
0.9
76.9
36.7
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003375
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003450
61879554 - 61902107
22554