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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61883902_61886663_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61883902 - 61886663
Intron Length:
2762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
CTTTACATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACTTTACAT
Flanking Amino Acid:
PPVFTQDSYQVSFPELISVG
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
70.1
0.45
1
62.8
42.7
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
61.8
0.45
1.8
81.86
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003375
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003450
61879554 - 61902107
22554