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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61886951_61888458_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61886951 - 61888458
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TACTCCAAAAAT
Flanking Amino Acid:
QPPGEVEVPENVLPGFTVTQ
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
80.6
0.69
0.9
77.5
41
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
49.4
0.03
2
71.53
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003375
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003450
61879554 - 61902107
22554