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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61888590_61891391_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61888590 - 61891391
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTTTAATT
Flanking Amino Acid:
ILNRENTSSYRLVVQAADKG
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.7
0.67
0.8
74.9
33.6
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
83.7
1.13
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003375
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003450
61879554 - 61902107
22554