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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61891544_61893067_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61891544 - 61893067
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCCTCCTAAACA
Flanking Amino Acid:
GQTAKTDIIQIFATDLDSGL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.7
0.44
0.9
65.7
33.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
68.9
0.59
1.7
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003375
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003450
61879554 - 61902107
22554