About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61917531_61918334_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61917531 - 61918334
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAGA
5'SS Class:
major
3'SS Sequence:
TGCTTGATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAAAT
Flanking Amino Acid:
VAPGKELSAKVLEGQPSGTL
Intron Amino Acid Position:
1222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
70.6
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.3
0.37
1.1
61.3
43.6
Minor 5ss
36.6
-1.5
2.5
43.3
43.7
Minor BPS
58.9
0.36
1.7
78.73
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020683
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047957
61917405 - 61988840
71436