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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61918523_61919887_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61918523 - 61919887
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGTTT
5'SS Class:
major
3'SS Sequence:
CTTTGTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTTCCCTCATT
Flanking Amino Acid:
GKYFKMNSNTGEIINWVALD
Intron Amino Acid Position:
1159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
70.4
42.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
79.8
0.67
0.8
77.3
31.5
Minor 5ss
46.8
-0.3
3.5
72.7
44.5
Minor BPS
64.1
0.52
2.1
88.6
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020683
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047957
61917405 - 61988840
71436