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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61936321_61946170_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61936321 - 61946170
Intron Length:
9850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
YDLLVKAMDGGGLSAQAFVR
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.9
0.52
1
67.5
38.2
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020683
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047957
61917405 - 61988840
71436