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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61946363_61984145_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61946363 - 61984145
Intron Length:
37783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATCTTTAAAACT
Flanking Amino Acid:
HAAPGRCLLQVKATDADADQ
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
48.9
0
1.9
70.16
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020683
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047957
61917405 - 61988840
71436