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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62008863_62009794_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62008863 - 62009794
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CCTTATGAGACT
Flanking Amino Acid:
IKVYKEDDTATEETHPVSWK
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
73.2
33.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
83.6
0.76
0.6
81.8
23
Minor 5ss
46.1
-0.4
2.5
57.9
46.7
Minor BPS
40.7
-0.6
2.3
58.83
45.2

Associated Gene:

Gene:
PLRG1
Ensembl Gene ID:
ENSAPLG00000003763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003887
62008803 - 62021786
12984