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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62014319_62014431_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62014319 - 62014431
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
VKCWDLEYNKVIRHYHGHLS
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
78.6
35
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
PLRG1
Ensembl Gene ID:
ENSAPLG00000003763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003887
62008803 - 62021786
12984