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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62015021_62017027_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62015021 - 62017027
Intron Length:
2007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
QWHPPWKLYRVISGHLGWVR
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.4
0.66
1
81.2
28.3
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
PLRG1
Ensembl Gene ID:
ENSAPLG00000003763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003887
62008803 - 62021786
12984