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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62017939_62019470_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62017939 - 62019470
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GCTTTTTTTAAG
Flanking Amino Acid:
TGTHPYPSGPGVALTADTKI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.8
0.62
1
82.5
32.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
47.7
-0.3
1.8
52.19
42.5

Associated Gene:

Gene:
PLRG1
Ensembl Gene ID:
ENSAPLG00000003763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003887
62008803 - 62021786
12984