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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62020681_62020920_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62020681 - 62020920
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTCTTCCAACA
Flanking Amino Acid:
NAKPIPLDDESHKVKMAVKL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
75.1
0.56
0.9
70.3
35.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
47.4
-0.2
1.8
62.42
37.3

Associated Gene:

Gene:
PLRG1
Ensembl Gene ID:
ENSAPLG00000003763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003887
62008803 - 62021786
12984