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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62027413_62028406_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62027413 - 62028406
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
GGCKHPLEELGVLCPTGCEL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
FGB
Ensembl Gene ID:
ENSAPLG00000004339
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004474
62025567 - 62032824
7258