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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62028591_62029179_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62028591 - 62029179
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTTCTGATCT
Flanking Amino Acid:
KLIKTQKQRKDNDILLSEYN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.4
0.71
0.8
74
41
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
55.3
0.24
1.8
73.14
43.6

Associated Gene:

Gene:
FGB
Ensembl Gene ID:
ENSAPLG00000004339
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004474
62025567 - 62032824
7258