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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62030815_62030994_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62030815 - 62030994
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TATTGCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACAGAGCT
Flanking Amino Acid:
SGGKNYCDTPGEYWLGNDKI
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
80
0.68
0.9
77.2
36.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
45.8
-0.2
2.1
73.28
42.5

Associated Gene:

Gene:
FGB
Ensembl Gene ID:
ENSAPLG00000004339
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004474
62025567 - 62032824
7258