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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62031281_62032201_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62031281 - 62032201
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACATCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGTCTTAACT
Flanking Amino Acid:
FSTYDRDNDGWLTTDSRKQC
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.6
0.53
1
71.9
38.1
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
77.4
0.94
1.3
86.99
39.2

Associated Gene:

Gene:
FGB
Ensembl Gene ID:
ENSAPLG00000004339
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004474
62025567 - 62032824
7258