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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62038061_62038676_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62038061 - 62038676
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGTTCCCTAACC
Flanking Amino Acid:
DQVLEMKRLEVDIDIKIRAC
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.8
0.65
0.9
73.7
35.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
70.8
0.63
1.7
78.95
35.6

Associated Gene:

Gene:
FGA
Ensembl Gene ID:
ENSAPLG00000004506
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045316
62035860 - 62042186
6327
ENSAPLT00000004637
62035711 - 62042186
6476