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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62039296_62042039_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62039296 - 62042039
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
CTTCCAATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AAGACTTTAACA
Flanking Amino Acid:
CVLLCLNLAWGTKCPSGCRI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71.6
38.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
69.6
0.44
0.8
67
32.8
Minor 5ss
42
-0.9
3.5
56.1
48.1
Minor BPS
67
0.53
1.3
67.8
38.3

Associated Gene:

Gene:
FGA
Ensembl Gene ID:
ENSAPLG00000004506
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045316
62035860 - 62042186
6327