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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62040262_62042039_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62040262 - 62042039
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
TTTCACCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTTTTCACCT
Flanking Amino Acid:
CVLLCLNLAWAQDGKSSFEK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71.6
38.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74
0.54
1
69.9
36.2
Minor 5ss
42
-0.9
3.5
56.1
48.1
Minor BPS
53.8
0.2
1.8
74.97
42.5

Associated Gene:

Gene:
FGA
Ensembl Gene ID:
ENSAPLG00000004506
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004637
62035711 - 62042186
6476