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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62063548_62063835_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62063548 - 62063835
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CGGCTTTTAACT
Flanking Amino Acid:
LLTAARARSPDLGYTPDFVS
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.8
0.69
0.9
77.7
36.3
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
61.7
0.45
1.3
69.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004985
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029014
62061487 - 62119338
57852
ENSAPLT00000005147
62062920 - 62113676
50757