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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62082858_62084522_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62082858 - 62084522
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAACT
5'SS Class:
major
3'SS Sequence:
CCTCTATCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTCTGTAATC
Flanking Amino Acid:
KGSPPSTFYKVSATYLDGFR
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.7
36.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.3
0.37
0.9
66.1
34.8
Minor 5ss
42.3
-0.9
2.8
59.4
44.8
Minor BPS
58.1
0.23
2
69.54
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004985
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029014
62061487 - 62119338
57852
ENSAPLT00000005147
62062920 - 62113676
50757