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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62084630_62086710_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62084630 - 62086710
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGTTTACTAATT
Flanking Amino Acid:
GKLTAESILKRTRLIFSQLG
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.5
0.71
0.9
76.4
37.4
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
50.9
0.11
1.9
72.99
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004985
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029014
62061487 - 62119338
57852
ENSAPLT00000005147
62062920 - 62113676
50757