Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62091165_62102731_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62091165 - 62102731

Intron Length:

11567

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAATACT

5'SS Class:

major

3'SS Sequence:

TTTCGATTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTTTGTGAATT

Flanking Amino Acid:

KEIAPAGTGMAPGLTGIVGG

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

77.8

36.9

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

82.6

0.73

0.9

73.7

40.8

Minor 5ss

37.3

-1.4

2.8

44.1

43.3

Minor BPS

59.2

0.37

2.1

84.15

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005147

62062920 - 62113676

50757

ENSAPLT00000029014

62061487 - 62119338

57852