Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62103060_62106211_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62103060 - 62106211

Intron Length:

3152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

GTATTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAC

U12 Branch Point Sequence:

TGTAATTTGACA

Flanking Amino Acid:

FFHYPKSDVQISLFLNGQHV

Intron Amino Acid Position:

572

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.6

33.3

Major BPS

77.7

0.69

0.9

69.1

37.9

Major PPT

84.9

0.78

0.9

77.1

41.8

Minor 5ss

37.9

-1.4

3.3

56.5

47.6

Minor BPS

58.2

0.25

1.5

69.02

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029014

62061487 - 62119338

57852

ENSAPLT00000005147

62062920 - 62113676

50757