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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62112528_62113669_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62112528 - 62113669
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTATTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTCATAAAAA
Flanking Amino Acid:
REKPEEELVTSS*
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.3
0.75
0.8
80.4
31.5
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
48.2
-0.1
2
61.53
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004985
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005147
62062920 - 62113676
50757