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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62112528_62116902_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62112528 - 62116902
Intron Length:
4375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TAAACTTTATTT
Flanking Amino Acid:
REKPEEELVTRYELPGVHGL
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
56.6
0.29
1.6
70.74
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004985
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029014
62061487 - 62119338
57852