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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62124080_62124869_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62124080 - 62124869
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCGGGGACA
5'SS Class:
weak_major
3'SS Sequence:
GTGGTCCTGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTGTAT
U12 Branch Point Sequence:
AGTAGTGTATCC
Flanking Amino Acid:
VSLQTDKVGGHSLLGSAHKF
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.3
55.8
35.5
Major BPS
49
-0
1.5
49.2
46
Major PPT
47.1
-0.1
1.8
54.6
45.8
Minor 5ss
17.6
-3.7
3.8
27.4
37.4
Minor BPS
38.6
-0.8
2.3
49.72
40.9

Associated Gene:

Gene:
LRAT
Ensembl Gene ID:
ENSAPLG00000019429
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036655
62123499 - 62125062
1564