Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62147682_62151335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62147682 - 62151335

Intron Length:

3654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

TTGAGGTGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

CTTACTGCAACT

Flanking Amino Acid:

LAAQLTLLHLAPFPR*

Intron Amino Acid Position:

468

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.8

87.1

Major BPS

89.7

0.98

0.7

89.9

Major PPT

64.7

0.33

1.1

57.6

47.3

Minor 5ss

-0.8

2.9

57.2

47.1

Minor BPS

48.2

-0

2.2

72.54

44.5

Associated Gene:

Gene:

RBM46

Ensembl Gene ID:

ENSAPLG00000005116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005281

62141331 - 62152082

10752