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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62210663_62214563_R

Intron Information:

Intron Rank:
131671
Intron Class:
major
Intron Phase:
Intron Coordinates:
62210663 - 62214563
Intron Length:
3901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTGTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
68.9
0.59
1.7
78.71
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018028
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040325
62210258 - 62215450
5193