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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62258950_62260148_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62258950 - 62260148
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
TGTTCTTGTATT
Flanking Amino Acid:
WTKLCNTWCQGQLYCLDQTA
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
56.8
0.3
1.8
77.3
39.6

Associated Gene:

Gene:
NPY2R
Ensembl Gene ID:
ENSAPLG00000011405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011870
62257053 - 62261568
4516