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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62329098_62334146_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62329098 - 62334146
Intron Length:
5049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
KAIEEYERWLKKTERREQLE
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.5
30.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
46.3
-0.4
2.8
64.2
42.3
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
MAP9
Ensembl Gene ID:
ENSAPLG00000005132
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005300
62327663 - 62342490
14828