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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62335150_62335623_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62335150 - 62335623
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TGATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GAATCCTTGATT
Flanking Amino Acid:
NAEKMEAAQKAFEKWKERKA
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.4
0.66
0.8
78.1
36.2
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
72.3
0.78
1.2
77.72
38.4

Associated Gene:

Gene:
MAP9
Ensembl Gene ID:
ENSAPLG00000005132
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005300
62327663 - 62342490
14828