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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62335786_62336482_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62335786 - 62336482
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTA
5'SS Class:
major
3'SS Sequence:
ATTTTCAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTTTCAATC
Flanking Amino Acid:
AENLRIDTEKKEDIKRKEAI
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
77.9
32.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.3
0.5
0.9
64.7
41
Minor 5ss
46.2
-0.4
2.4
58.8
45.7
Minor BPS
62.5
0.37
1.4
70.75
34.7

Associated Gene:

Gene:
MAP9
Ensembl Gene ID:
ENSAPLG00000005132
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005300
62327663 - 62342490
14828