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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62337923_62338444_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62337923 - 62338444
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
VLQKSKPSSCRSLSSANLKK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
MAP9
Ensembl Gene ID:
ENSAPLG00000005132
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005300
62327663 - 62342490
14828