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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62338501_62339472_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62338501 - 62339472
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TGAAATTTTACT
Flanking Amino Acid:
SKMTSEDFVKKQSETKATVL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
78
0.63
0.8
77.1
37.1
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
48.7
-0
1.8
67.55
42.5

Associated Gene:

Gene:
MAP9
Ensembl Gene ID:
ENSAPLG00000005132
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005300
62327663 - 62342490
14828