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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62489420_62490490_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62489420 - 62490490
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCTGACTAAAAT
Flanking Amino Acid:
KIISDHADAAGVPVESLRES
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
72.9
0.52
1
67
39.3
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
48.5
-0
2
69.83
46.7

Associated Gene:

Gene:
GUCY1A1
Ensembl Gene ID:
ENSAPLG00000010971
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023117
62473476 - 62498062
24587
ENSAPLT00000011430
62473887 - 62498062
24176
ENSAPLT00000047528
62464065 - 62498062
33998