Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62491201_62492397_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62491201 - 62492397

Intron Length:

1197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTAACTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAA

U12 Branch Point Sequence:

GTTTCTTTAACT

Flanking Amino Acid:

WDNTDMKSSMVMDLKGQMIY

Intron Amino Acid Position:

361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.1

Major BPS

74.7

0.61

65.9

40.9

Major PPT

76.6

0.6

73.4

41.6

Minor 5ss

29.9

-2.3

3.3

42.5

Minor BPS

88.8

1.3

0.9

96.8

27.8

Associated Gene:

Gene:

GUCY1A1

Ensembl Gene ID:

ENSAPLG00000010971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047528

62464065 - 62498062

33998

ENSAPLT00000023117

62473476 - 62498062

24587

ENSAPLT00000011430

62473887 - 62498062

24176