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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62495745_62497860_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62495745 - 62497860
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCATTTTTAACC
Flanking Amino Acid:
RKINVSPTTYRLLKEYPGFV
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.8
0.72
0.9
77
36.7
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
73.7
0.72
1.1
74.26
36.7

Associated Gene:

Gene:
GUCY1A1
Ensembl Gene ID:
ENSAPLG00000010971
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023117
62473476 - 62498062
24587
ENSAPLT00000011430
62473887 - 62498062
24176
ENSAPLT00000047528
62464065 - 62498062
33998