About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62520398_62521174_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
62520398 - 62521174
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTGTTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.7
0.49
1
67.7
42.7
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
73.9
0.83
1.3
85.39
35.1

Associated Gene:

Gene:
GUCY1B1
Ensembl Gene ID:
ENSAPLG00000011190
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048471
62520297 - 62544903
24607
ENSAPLT00000011675
62520297 - 62544838
24542